SNP Profiles of SCA 9 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AC	AA	AA	AA	GG	AG	CC	AA	GG	GG	AA	AA	AC
1._RUQ_1064	_	_	_	_	_	_	AG	_	_	_	_	_	_	_
2._RUQ_1064	_	_	_	_	_	CC	_	_	_	_	GG	_	_	_
3._RUQ_1064	_	_	_	_	_	CC	_	GG	_	_	GG	_	_	_
4._SCA9	_	_	_	_	_	CT	_	_	_	_	AG	_	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	AA	AG	GG	AA	GG	AC	AA	GG	AA	CC	GG	GG
1._RUQ_1064	_	TT	_	_	_	_	_	AC	_	CC	_	_	_	_
2._RUQ_1064	_	_	_	_	_	_	CC	AC	_	GG	_	_	CC	_
3._RUQ_1064	_	TT	_	CT	_	_	CC	AC	TT	CC	AA	GG	CC	_
4._SCA9	_	_	_	_	_	_	CT	CC	_	GG	_	_	CT	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AT	GG	AA	CG	AG	GG	AG	GG	CC	TT	AT	GG	GG	AT
1._RUQ_1064	_	_	_	_	AG	_	_	_	_	_	_	GG	_	_
2._RUQ_1064	_	GG	AA	CG	AG	_	_	_	_	_	_	_	GG	AT
3._RUQ_1064	_	GG	AA	CG	AG	_	CT	_	_	_	_	GG	GG	AT
4._SCA9	_	_	_	GG	AG	_	_	_	_	_	_	_	AG	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AG	GG	GG	GG	AA	GG	AA	AA	CC	AA	CC	GG	GG	AA
1._RUQ_1064	_	_	_	_	_	_	_	_	CC	_	_	_	GG	AA
2._RUQ_1064	CT	_	_	_	_	CC	_	_	_	_	_	_	GG	AA
3._RUQ_1064	_	_	_	_	_	CC	_	_	CC	_	GG	_	GG	AA
4._SCA9	CC	_	_	_	_	CC	_	_	_	_	_	_	CG	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	GG	AG	AA	AA	CC	GG	AA	AA	AC	AA	AC	CC	GG
1._RUQ_1064	_	CC	_	_	_	GG	GG	_	_	_	_	AC	TT	_
2._RUQ_1064	_	CC	_	_	_	_	_	_	TT	_	_	_	_	GG
3._RUQ_1064	_	CC	CT	_	_	GG	GG	TT	_	_	TT	AC	_	_
4._SCA9	_	CT	_	_	_	_	_	_	TT	_	_	_	_	AA

	71	72	73	74	75	76	77	78	79	80	81
_Input profile	GG	AG	GG	GG	CC	AG	GG	GG	AA	AG	AG	X_X	X_X	X_X
1._RUQ_1064	CC	_	_	GG	_	_	_	_	_	_	AG	X_X	X_X	X_X
2._RUQ_1064	GG	CT	_	_	_	_	_	_	_	CT	_	X_X	X_X	X_X
3._RUQ_1064	CC	TT	_	-	CC	_	_	_	_	_	AG	X_X	X_X	X_X
4._SCA9	GG	CT	_	_	_	_	_	_	_	CT	_	X_X	X_X	X_X

Input profile: SCA_9 RUQ_1064

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Mars, 2018

1._SCA_9 RUQ_1064

64.7 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

2._SCA_9 RUQ_1064

59.1 %
22 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

3._SCA_9 RUQ_1064

47.2 %
36 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._SCA_9 SCA9

30 %
20 shared markers

View View all Clone Any

Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1383	20	TcSNP1414
21	TcSNP1439	22	TcSNP144	23	TcSNP1442	24	TcSNP1458	25	TcSNP1484
26	TcSNP150	27	TcSNP151	28	TcSNP1520	29	TcSNP154	30	TcSNP174
31	TcSNP193	32	TcSNP226	33	TcSNP230	34	TcSNP240	35	TcSNP242
36	TcSNP25	37	TcSNP28	38	TcSNP316	39	TcSNP32	40	TcSNP329
41	TcSNP364	42	TcSNP372	43	TcSNP413	44	TcSNP418	45	TcSNP42
46	TcSNP429	47	TcSNP430	48	TcSNP448	49	TcSNP497	50	TcSNP521
51	TcSNP529	52	TcSNP547	53	TcSNP560	54	TcSNP561	55	TcSNP577
56	TcSNP591	57	TcSNP60	58	TcSNP602	59	TcSNP619	60	TcSNP653
61	TcSNP689	62	TcSNP723	63	TcSNP731	64	TcSNP75	65	TcSNP751
66	TcSNP776	67	TcSNP799	68	TcSNP823	69	TcSNP836	70	TcSNP860
71	TcSNP872	72	TcSNP891	73	TcSNP894	74	TcSNP899	75	TcSNP90
76	TcSNP917	77	TcSNP929	78	TcSNP944	79	TcSNP953	80	TcSNP994
81	TcSNP998

SNP Profiles of SCA 9 View Data

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Input profile: SCA_9 RUQ_1064

1._SCA_9 RUQ_1064

64.7 % 17 shared markers

2._SCA_9 RUQ_1064

59.1 % 22 shared markers

3._SCA_9 RUQ_1064

47.2 % 36 shared markers

4._SCA_9 SCA9

30 % 20 shared markers

64.7 %
17 shared markers

59.1 %
22 shared markers

47.2 %
36 shared markers

30 %
20 shared markers